Accurate metagenomic profiling && Fast large-scale sequence/genome searching
hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes
ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data
The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.
discover-virome: identify and quantify viruses from metagenomic assemblies
quantify-virome: identify and quantify viruses from metagenomic shotgun sequences
The Metagenome-Assembled Genome Inventory for Children (MAGIC)
A novel ML-based binary classifier to tell viral and non-viral long reads apart in metagenomic samples.
microbialites stromatolites metagenomes metagenomics denovo-assembly
Viral contig analysis (hecatomb-lite)
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