Structural variation caller using third generation sequencing

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

Structural variant and indel caller for mapped sequencing data

Structural variant toolkit for VCFs

Long read based human genomic structural variation detection with cuteSV

structural variant calling and genotyping with existing tools, but, smoothly.

Fast and accurate gene fusion detection from RNA-Seq data

A structural variation pipeline for short-read sequencing

Graph realignment tools for structural variants

Tools for processing and analyzing structural variants.

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

don't get DUP'ed or DEL'ed by your putative SVs.

Toolkit for calling structural variants using short or long reads

simuG: a general-purpose genome simulator

A method for variant graph genotyping based on exact alignment of k-mers

Merging, Annotation, Validation, and Illustration of Structural variants

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data