✏️ A versatile DNA sequence optimizer
-
Updated
Dec 17, 2024 - Python
#
codon-optimization
Here are 16 public repositories matching this topic...
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
machine-learning bioinformatics deep-learning synthetic-biology computational-biology gene-expression biotechnology codon-optimization codon codon-optimizer
-
Updated
Nov 3, 2024 - Python
RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8
-
Updated
Apr 10, 2023 - Python
📊 Codon usage tables in code-friendly format + Python bindings
-
Updated
May 5, 2022 - Python
A Go package for designing DNA.
go bioinformatics synthetic-biology computational-biology sam genbank fasta fastq molecular-biology synbio rna-folding goldengate dna-barcode plasmids codon-optimization codon-usage pileup genetic-engineering dna-folding
-
Updated
Dec 14, 2024 - Go
Simple Python program to perform codon optimization or heterology calculations.
protein-sequences dna-sequences codons codon-optimization codon-usage codon-bias codon-frequencies codon-optimizer
-
Updated
Apr 13, 2021 - Python
Cho codon optimization WIP
-
Updated
Oct 20, 2024 - Jupyter Notebook
Codonopt program is designed for codon optimization of protein sequences. The core of it based on the mathematical codon optimization proposed by Şen et al. (2020)
-
Updated
Apr 8, 2021 - Python
A tool to translate a given protein sequence into a DNA sequence based on a constructed codon use table for a target heterologous host, Nicotiana benthamiana.
-
Updated
Aug 12, 2022 - R
Phage library sequence generator with degenerate basepairs.
-
Updated
Mar 14, 2023 - Python
CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.
-
Updated
Mar 29, 2024 - R
Shiny Web app for automatic codon optimization based on codon usage in Strongyloides species, Pristionchus species, Brugia malayi, as well as user-provided custom codon lookup tables
-
Updated
Jun 25, 2024 - R
A Novel Approach to Codon Optimization Based on Machine Learning and Genetic Algorithm
machine-learning bioinformatics genetic-algorithm bioinformatics-tool codon-optimization codon-usage
-
Updated
Apr 2, 2023 - Jupyter Notebook
RNA folding and codon optimization in pure Rust
-
Updated
Dec 27, 2023 - Rust
It is simple codon optimiser by using codon bias and usage
-
Updated
Mar 26, 2023 - Python
Improve this page
Add a description, image, and links to the codon-optimization topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the codon-optimization topic, visit your repo's landing page and select "manage topics."