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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 237 54

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 49 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 52 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 15 2

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 19 6

Repositories

Showing 10 of 239 repositories
  • hpotools Public

    Human Phenotype Ontology tools

    monarch-initiative/hpotools’s past year of commit activity
    Java 1 MIT 0 1 0 Updated Dec 20, 2024
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 62 2 Updated Dec 19, 2024
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 6 3 230 (1 issue needs help) 16 Updated Dec 19, 2024
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 237 CC-BY-4.0 54 400 (2 issues need help) 38 Updated Dec 19, 2024
  • pheval Public

    A framework for empirical evaluation of phenotype matching and prioritisation

    monarch-initiative/pheval’s past year of commit activity
    Python 12 Apache-2.0 2 28 4 Updated Dec 19, 2024
  • koza Public

    Data transformation framework for LinkML data models

    monarch-initiative/koza’s past year of commit activity
    Python 49 BSD-3-Clause 4 37 (1 issue needs help) 3 Updated Dec 19, 2024
  • vertebrate-breed-ontology Public
    monarch-initiative/vertebrate-breed-ontology’s past year of commit activity
    Makefile 11 1 55 4 Updated Dec 19, 2024
  • ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    monarch-initiative/ontogpt’s past year of commit activity
    Jupyter Notebook 628 BSD-3-Clause 83 60 9 Updated Dec 18, 2024
  • phenotype2phenopacket Public

    Phenotype2Phenopacket is a command-line tool that converts a phenotype annotation into GA4GH Phenopackets, facilitating standardised phenotypic data representation.

    monarch-initiative/phenotype2phenopacket’s past year of commit activity
    Python 2 1 0 0 Updated Dec 18, 2024
  • monarch-app Public

    Monarch Initiative website and API

    monarch-initiative/monarch-app’s past year of commit activity
    Python 19 BSD-3-Clause 6 191 (3 issues need help) 9 Updated Dec 18, 2024
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