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@bids-apps

BIDS Apps

A collection of containerized neuroimaging workflows and pipelines that accept datasets organized according to the Brain Imaging Data Structure (BIDS).
README.md

👋 Welcome to the BIDS Apps github organization 👋

Click the following link if you want to view the BIDS Apps website.

If you want to learn more about BIDS in general, have a look at the bids-standard GitHub organization.

For generic BIDS related question use the NeuroStars Discourse Forum, under the bids tag.

Otherwise feel free to open an issue on any of those repositories if you have specific questions or requests

As a reminder, all contributors have to adhere to our Code of Conduct.

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  1. dockerfile-templates dockerfile-templates Public

    Dockerfile templates commonly used in BIDS Apps

    Dockerfile 11 8

  2. example example Public template

    This an example app that can serve as a template.

    Python 17 31

  3. bids-apps.github.io bids-apps.github.io Public

    This BIDS Apps website has now been integrated to the BIDS website: https://github.com/bids-standard/bids-website.git

    CSS 3 14

  4. maintenance-tools maintenance-tools Public

    Shell

Repositories

Showing 10 of 43 repositories
  • cat12 Public

    BIDS app version of the CAT12 toolbox

    bids-apps/cat12’s past year of commit activity
    Python 1 MIT 0 6 1 Updated Dec 16, 2024
  • giga_connectome Public

    generate connectome from fMRIPrep outputs

    bids-apps/giga_connectome’s past year of commit activity
    Python 4 MIT 6 27 2 Updated Dec 2, 2024
  • base_validator Public
    bids-apps/base_validator’s past year of commit activity
    Dockerfile 0 Apache-2.0 3 0 0 Updated Nov 10, 2024
  • tracula Public

    implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.

    bids-apps/tracula’s past year of commit activity
    Python 3 Apache-2.0 4 1 1 Updated Nov 4, 2024
  • mindboggle Public

    Improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image data

    bids-apps/mindboggle’s past year of commit activity
    Python 5 Apache-2.0 4 9 1 Updated Nov 4, 2024
  • hyperalignment Public

    Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.

    bids-apps/hyperalignment’s past year of commit activity
    Python 14 Apache-2.0 7 1 0 Updated Nov 4, 2024
  • rs_signal_extract Public

    BIDS App for resting state signal extraction using nilearn.

    bids-apps/rs_signal_extract’s past year of commit activity
    Python 6 Apache-2.0 6 1 1 Updated Nov 4, 2024
  • oppni Public

    runs fast optimization of preprocessing pipelines for BOLD fMRI

    bids-apps/oppni’s past year of commit activity
    Shell 5 Apache-2.0 3 7 0 Updated Nov 4, 2024
  • ndmg Public

    BIDS app for NeuroData's MRI to Graphs pipeline

    bids-apps/ndmg’s past year of commit activity
    Dockerfile 5 Apache-2.0 8 2 0 Updated Nov 4, 2024
  • example Public template

    This an example app that can serve as a template.

    bids-apps/example’s past year of commit activity
    Python 17 Apache-2.0 31 3 0 Updated Nov 4, 2024
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