Skip to content

Issues: YoshitakaMo/localcolabfold

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

83 Open 180 Closed
83 Open 180 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Question:
#278 opened Dec 5, 2024 by chensena
1
Question:will AF3 be added to this project?
#276 opened Nov 12, 2024 by CykaZH
Question:cannot access install_colabbatch_linux.sh
#275 opened Nov 12, 2024 by ZhaoPengpeng1116
1
Using precomputed MSA and PDB files for running massive 3d structure prediction
#274 opened Nov 8, 2024 by berkeucar
4
CUDA12.6, gcc9.4, but "There was an error before creating cudnn handle (500): cudaErrorSymbolNotFound : named symbol not found"
#272 opened Nov 3, 2024 by Huilin-Li
code error running colabfold_batch with custom templates
#271 opened Oct 30, 2024 by bioinfcib
4
Both ColabFold notebook and localcolabfold cannot predict this sequence.
#270 opened Oct 29, 2024 by Huilin-Li
Custom templates when doing a series of runs
#265 opened Oct 22, 2024 by TieliangGan
1
Question: Timeout while submitting to MSA server. Retrying...
#264 opened Oct 22, 2024 by t1nglanwang
How to change how the output files are named
#262 opened Oct 17, 2024 by johnny-rodriguez
AttributeError: module 'jax' has no attribute 'linear_uti
#261 opened Sep 25, 2024 by ohjeyy93
4
custom heterdimer multiple alignment format
#259 opened Sep 19, 2024 by fglaser
3
Can I submit multiple folding jobs as a batch on one GPU in parallel?
#257 opened Sep 16, 2024 by harshagrawal13
1
Suddenly no gpu deteced, ratelimit, and no msa output...
#252 opened Aug 27, 2024 by ohjeyy93
13
Question: Force to use template with no sequence similarity
#250 opened Aug 23, 2024 by Bienenwolf655
2
Colabfold template selection
#249 opened Aug 21, 2024 by GISTAL
Running LocalColabFold for multimer inference with precomputed monomer MSAs for each chain
#247 opened Aug 9, 2024 by miarosenfeld
Failed runs when no GPU devices is present.
#246 opened Jul 30, 2024 by lyskov
why my colabfold_search run takes too long time?
#245 opened Jul 28, 2024 by spark159
3
Minimal ad-hoc sequence database
#244 opened Jul 19, 2024 by agarrubio
Why does pLDDT get lower with the increase of recycle? Shouldn't the confidence level get higher with recycle
#242 opened Jul 2, 2024 by 15019669985
Question: Warning: importing 'simtk.openmm' is deprecated
#241 opened Jun 25, 2024 by MichaelCato
1
Question: Compatibility Issues With Jax and TensorFlow
#240 opened Jun 17, 2024 by MichaelCato
6
CUDA_ERROR_ILLEGAL_ADDRESS: an illegal memory access was encountered
#239 opened Jun 1, 2024 by ilnamkang
Question: FAILED_PRECONDITION: DNN library initialization
#235 opened May 13, 2024 by tanmoyp635
1
ProTip! Follow long discussions with comments:>50.