_quarto.yml

project:
  type: book
  pre-render: lib/pre-render.R
  output-dir: _book
  resources:
  - "/.nojekyll"

book:
  title: "BioDataGuide"
  subtitle: "Darwin Core Marine Example Compendium"
  description: "Scaling multiple dimensions of diversity in biological data"
  author: 
    - "By: [Standardizing Marine Biological Data Working Group](https://github.com/ioos/bio_data_guide/graphs/contributors)"
    - "![](/figs/contrib.rocks.svg)"
  date: today
  date-format: "YYYY-MM-DD"
  site-url: https://ioos.github.io/bio_data_guide/
  repo-url: https://github.com/ioos/bio_data_guide/
  repo-actions: [edit]
  downloads: [pdf, epub]
  sharing: [twitter, facebook, linkedin]
  # google-analytics: "G-V3HZN14Z8G" # TODO: add Google Analytics
  search: true
  page-navigation: true
  chapters:
    - index.qmd
    - intro.qmd
    - part: apps.qmd
      chapters:
        - datasets/TPWD_HARC_BagSeine/TPWD_HARC_BagSeine_OBISENV.qmd
        - datasets/hakai_salmon_data/salmon-darwin-core-remap.qmd
        - datasets/hakai_seagrass_data/hakaiSeagrassToDWC.qmd
        - datasets/trawl_catch_data/trawl-catch-data.qmd
        - datasets/dataset-edna/README.qmd  # NOTE: this needs to be copied from README.qmd, since in git submodule
        - datasets/atn_satellite_telemetry/atn_satellite_telemetry_netCDF2DwC.qmd
  appendices:
    - faq.qmd
    - tools.qmd
    - extras.qmd
    - references.qmd

bibliography: ["refs/book.bib", "refs/packages.bib", "refs/OBIS_data_examples.bib"]
bibliographystyle: apa
link-citations: true

format:
  html:
    theme: cosmo
    css: lib/style.css
    toc: true
    number-sections: true
  pdf:
    documentclass: scrreprt
    # keep-tex: true  # for debugging
    include-in-header: lib/preamble.tex
    nocite: |
      @*
  epub: default