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How to run BWA mem2 instead of BWA. #3

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ghuls opened this issue Feb 7, 2024 · 1 comment
Open

How to run BWA mem2 instead of BWA. #3

ghuls opened this issue Feb 7, 2024 · 1 comment

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@ghuls
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ghuls commented Feb 7, 2024

How to run:
https://github.com/exaloop/seq/blob/master/test/apps/bwa/example.seq
with BWA mem2 instead of BWA.

Compile instructions for BWA to make libbwa.so do not work for BWA mem2:
https://docs.seq-lang.org/tutorial/tutorial.html?highlight=bwa#calling-bwa-from-seq
@ghuls
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ghuls commented Feb 7, 2024

Exposing paired end mapping of BWA would be nice to have too.

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@ghuls